Skip to main content

Ecological genomics of adaptation to unpredictability in experimental rotifer populations (2019)
Journal Article
Tarazona, E., Hahn, C., Franch-Gras, L., García-Roger, E. M., José Carmona, M., & Gomez, A. (2019). Ecological genomics of adaptation to unpredictability in experimental rotifer populations. Scientific reports, 9, https://doi.org/10.1038/s41598-019-56100-y

Elucidating the genetic basis of phenotypic variation in response to different environments is key to understanding how populations evolve. Facultatively sexual rotifers can develop adaptive responses to fluctuating environments. In a previous evolut... Read More about Ecological genomics of adaptation to unpredictability in experimental rotifer populations.

Founder effects drive the genetic structure of passively dispersed aquatic invertebrates (2018)
Journal Article
Montero-Pau, J., Gomez, A., & Serra, M. (2018). Founder effects drive the genetic structure of passively dispersed aquatic invertebrates. PeerJ, 6(12), https://doi.org/10.7717/peerj.6094

Populations of passively dispersed organisms in continental aquatic habitats typically show high levels of neutral genetic differentiation despite their high dispersal capabilities. Several evolutionary factors, including founder events, local adapta... Read More about Founder effects drive the genetic structure of passively dispersed aquatic invertebrates.

Genomic signatures of local adaptation to the degree of environmental predictability in rotifers (2018)
Journal Article
Franch-Gras, L., Hahn, C., García-Roger, E. M., Carmona, M. J., Serra, M., & Gómez, A. (2018). Genomic signatures of local adaptation to the degree of environmental predictability in rotifers. Scientific reports, 8(1), https://doi.org/10.1038/s41598-018-34188-y

Environmental fuctuations are ubiquitous and thus essential for the study of adaptation. Despite this, genome evolution in response to environmental fuctuations —and more specifcally to the degree of environmental predictability– is still unknown. Sa... Read More about Genomic signatures of local adaptation to the degree of environmental predictability in rotifers.

Mu-DNA: a modular universal DNA extraction method adaptable for a wide range of sample types (2018)
Journal Article
Sellers, G. S., Di Muri, C., Gómez, A., & Hänfling, B. (2018). Mu-DNA: a modular universal DNA extraction method adaptable for a wide range of sample types. Metabarcoding and Metagenomics, 2, e24556. https://doi.org/10.3897/mbmg.2.24556

Efficient DNA extraction is fundamental to molecular studies. However, commercial kits are expensive when a large number of samples need to be processed. Here we present a simple, modular and adaptable DNA extraction ‘toolkit’ for the isolation of hi... Read More about Mu-DNA: a modular universal DNA extraction method adaptable for a wide range of sample types.

Barcoding rotifer biodiversity in Mediterranean ponds using diapausing egg banks (2017)
Journal Article
Moreno, E., Conde-Porcuna, J. M., & Gómez, A. (2017). Barcoding rotifer biodiversity in Mediterranean ponds using diapausing egg banks. Ecology and Evolution, 7(13), 4855-4867. doi:10.1002/ece3.2986

The biodiversity of Mediterranean freshwater bodies is among the most threatened worldwide; therefore, its accurate estimation is an urgent issue. However, traditional methods are likely to underestimate freshwater zooplankton biodiversity due to its... Read More about Barcoding rotifer biodiversity in Mediterranean ponds using diapausing egg banks.

A new molecular diagnostic tool for surveying and monitoring Triops cancriformis populations (2017)
Journal Article
Sellers, G. S., Griffin, L. R., Hänfling, B., & Gómez, A. (2017). A new molecular diagnostic tool for surveying and monitoring Triops cancriformis populations. PeerJ, 2017(5), https://doi.org/10.7717/peerj.3228

© 2017 Sellers et al. The tadpole shrimp, Triops cancriformis, is a freshwater crustacean listed as endangered in the UK and Europe living in ephemeral pools. Populations are threatened by habitat destruction due to land development for agriculture a... Read More about A new molecular diagnostic tool for surveying and monitoring Triops cancriformis populations.

Isolation mediates persistent founder effects on zooplankton colonisation in new temporary ponds (2017)
Journal Article
Badosa, A., Frisch, D., Green, A. J., Rico, C., & Gómez, A. (2017). Isolation mediates persistent founder effects on zooplankton colonisation in new temporary ponds. Scientific reports, 7, doi:10.1038/srep43983. ISSN 2045-2322

Understanding the colonisation process in zooplankton is crucial for successful restoration of aquatic ecosystems. Here, we analyzed the clonal and genetic structure of the cyclical parthenogenetic rotifer Brachionus plicatilis by following populatio... Read More about Isolation mediates persistent founder effects on zooplankton colonisation in new temporary ponds.

Diapausing egg banks, lake size, and genetic diversity in the rotifer Brachionus plicatilis Müller (Rotifera, Monogononta) (2016)
Journal Article
Montero-Pau, J., Serra, M., & Gómez, A. (2017). Diapausing egg banks, lake size, and genetic diversity in the rotifer Brachionus plicatilis Müller (Rotifera, Monogononta). Hydrobiologia, 796(1), (77-91). doi:10.1007/s10750-016-2833-4. ISSN 0018-8158

Diapausing egg banks are reservoirs of ecological and genetic diversity in continental zooplankton. However, although habitat size has often been used as a proxy for population size, the relationship between the size of diapausing egg banks and genet... Read More about Diapausing egg banks, lake size, and genetic diversity in the rotifer Brachionus plicatilis Müller (Rotifera, Monogononta).

Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy (2016)
Journal Article
Mills, S., Alcántara-Rodríguez, J. A., Ciros-Pérez, J., Gómez, A., Hagiwara, A., Galindo, K. H., …Walsh, E. J. (2017). Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy. Hydrobiologia, 796(1), 39-58 . https://doi.org/10.1007/s10750-016-2725-7

Understanding patterns and processes in biological diversity is a critical task given current and rapid environmental change. Such knowledge is even more essential when the taxa under consideration are important ecological and evolutionary models. On... Read More about Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy.

Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis (2015)
Journal Article
Mathers, T. C., Hammond, R. L., Jenner, R., Hänfling, B., Atkins, J., & Gómez, A. (2015). Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis. Heredity, 115(1), 37-46. https://doi.org/10.1038/hdy.2015.10

© 2015 Macmillan Publishers Limited All rights reserved. Transitions in sexual system and reproductive mode may affect the course of sex chromosome evolution, for instance by altering the strength of sexually antagonistic selection. However, there ha... Read More about Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis.

Laboratory generation of new parthenogenetic lineages supports contagious parthenogenesis in Artemia (2014)
Journal Article
Maccari, M., Amat, F., Hontoria, F., & Gómez, A. (2014). Laboratory generation of new parthenogenetic lineages supports contagious parthenogenesis in Artemia. PeerJ, 2014(1), https://doi.org/10.7717/peerj.439

Contagious parthenogenesis-a process involving rare functional males produced by a parthenogenetic lineage which mate with coexisting sexual females resulting in fertile parthenogenetic offspring-is one of the most striking mechanisms responsible for... Read More about Laboratory generation of new parthenogenetic lineages supports contagious parthenogenesis in Artemia.

Origin and genetic diversity of diploid parthenogenetic Artemia in Eurasia (2013)
Journal Article
Maccari, M., Amat, F., & Gómez, A. (2013). Origin and genetic diversity of diploid parthenogenetic Artemia in Eurasia. PloS one, 8(12), e83348. doi:10.1371/journal.pone.0083348

There is wide interest in understanding how genetic diversity is generated and maintained in parthenogenetic lineages, as it will help clarify the debate of the evolution and maintenance of sexual reproduction. There are three mechanisms that can be... Read More about Origin and genetic diversity of diploid parthenogenetic Artemia in Eurasia.

Colonization and dispersal patterns of the invasive American brine shrimp Artemia franciscana (Branchiopoda: Anostraca) in the Mediterranean region (2013)
Journal Article
Muñoz, J., Gómez, A., Figuerola, J., Amat, F., Rico, C., & Green, A. J. (2014). Colonization and dispersal patterns of the invasive American brine shrimp Artemia franciscana (Branchiopoda: Anostraca) in the Mediterranean region. Hydrobiologia, 726(1), 25-41. https://doi.org/10.1007/s10750-013-1748-6

Cysts of the brine shrimp Artemia franciscana are harvested from the Great Salt Lake (GSL) and San Francisco Bay (SFB) saltworks in the USA, and marketed worldwide to provide live food for aquaculture. This species has become invasive across several... Read More about Colonization and dispersal patterns of the invasive American brine shrimp Artemia franciscana (Branchiopoda: Anostraca) in the Mediterranean region.

Bird migratory flyways influence the phylogeography of the invasive brine shrimp Artemia franciscana in its native American range (2013)
Journal Article
Muñoz, J., Amat, F., Green, A. J., Figuerola, J., & Gómez, A. (2013). Bird migratory flyways influence the phylogeography of the invasive brine shrimp Artemia franciscana in its native American range. PeerJ, 2013(1), (e200). doi:10.7717/peerj.200. ISSN 2167-8359

Since Darwin’s time, waterbirds have been considered an important vector for the dispersal of continental aquatic invertebrates. Bird movements have facilitated the worldwide invasion of the American brine shrimp Artemia franciscana, transporting cys... Read More about Bird migratory flyways influence the phylogeography of the invasive brine shrimp Artemia franciscana in its native American range.

Functional rare males in diploid parthenogenetic Artemia (2013)
Journal Article
Maccari, M., Gómez, A., Hontoria, F., & Amat, F. (2013). Functional rare males in diploid parthenogenetic Artemia. Journal of evolutionary biology, 26(9), 1934-1948. https://doi.org/10.1111/jeb.12191

Functional males that are produced occasionally in some asexual taxa - called 'rare males' - raise considerable evolutionary interest, as they might be involved in the origin of new parthenogenetic lineages. Diploid parthenogenetic Artemia produce ra... Read More about Functional rare males in diploid parthenogenetic Artemia.

Multiple global radiations in tadpole shrimps challenge the concept of 'living fossils' (2013)
Journal Article
Mathers, T. C., Hammond, R. L., Jenner, R. A., Hänfling, B., & Gomez, A. (2013). Multiple global radiations in tadpole shrimps challenge the concept of 'living fossils'. PeerJ, 1, e62. https://doi.org/10.7717/peerj.62

‘Living fossils’, a phrase first coined by Darwin, are defined as species with limited recent diversification and high morphological stasis over long periods of evolutionary time. Morphological stasis, however, can potentially lead to div... Read More about Multiple global radiations in tadpole shrimps challenge the concept of 'living fossils'.

High lability of sexual system over 250 million years of evolution in morphologically conservative tadpole shrimps (2013)
Journal Article
Mathers, T. C., Jenner, R. A., Zierold, T., Hammond, R. L., Hänfling, B., & Gomez, A. (2013). High lability of sexual system over 250 million years of evolution in morphologically conservative tadpole shrimps. BMC evolutionary biology, 13(1), 30. https://doi.org/10.1186/1471-2148-13-30

Background Sexual system is a key factor affecting the genetic diversity, population structure, genome structure and the evolutionary potential of species. The sexual system androdioecy – where males and hermaphrodites coexist in populations – is ext... Read More about High lability of sexual system over 250 million years of evolution in morphologically conservative tadpole shrimps.

Widespread secondary contact and new glacial refugia in the Halophilic Rotifer Brachionus Plicatilis in the Iberian Peninsula (2011)
Journal Article
Campillo, S., Serra, M., Carmona, M. J., & Gómez, A. (2011). Widespread secondary contact and new glacial refugia in the Halophilic Rotifer Brachionus Plicatilis in the Iberian Peninsula. PloS one, 6(6), e20986. doi:10.1371/journal.pone.0020986

Small aquatic organisms harbour deep phylogeographic patterns and highly structured populations even at local scales. These patterns indicate restricted gene flow, despite these organisms' high dispersal abilities, and have been explained by a combin... Read More about Widespread secondary contact and new glacial refugia in the Halophilic Rotifer Brachionus Plicatilis in the Iberian Peninsula.

Long-term coexistence of rotifer cryptic species (2011)
Journal Article
Montero-Pau, J., Ramos-Rodríguez, E., Serra, M., & Gómez, A. (2011). Long-term coexistence of rotifer cryptic species. PloS one, 6(6), doi:10.1371/journal.pone.0021530

Despite their high morphological similarity, cryptic species often coexist in aquatic habitats presenting a challenge in the framework of niche differentiation theory and coexistence mechanisms. Here we use a rotifer species complex inhabiting highly... Read More about Long-term coexistence of rotifer cryptic species.

Development of genomic resources for the phylogenetic analysis of the Brachionus plicatilis species complex (Rotifera: Monogononta) (2010)
Journal Article
Montero-Pau, J., & Gómez, A. (2011). Development of genomic resources for the phylogenetic analysis of the Brachionus plicatilis species complex (Rotifera: Monogononta). Hydrobiologia, 662(1), (43-50). doi:10.1007/s10750-010-0485-3. ISSN 0018-8158

There has been a substantial leap forward in the quantity and quality of genomic resources available for research on rotifers in recent years. We used available genomic and bioinformatics resources to identify variable regions of the genome to design... Read More about Development of genomic resources for the phylogenetic analysis of the Brachionus plicatilis species complex (Rotifera: Monogononta).


;